PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G03540.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 732aa    MW: 80978.2 Da    PI: 4.426
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G03540.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.42.3e-5291421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lp GfrFhPtdeelv +yLk k++g+  +++evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ +
  OGLUM08G03540.2   9 LPLGFRFHPTDEELVRHYLKGKITGQIRSEAEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVI 102
                      699************************99999***************96446677888************************************ PP

              NAM  93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       sk    k++++g+kktLvf++grapkge+t W+mheyr 
  OGLUM08G03540.2 103 RSKgdkkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                      **988777777***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-593163IPR003441NAC domain
PROSITE profilePS5100557.5689163IPR003441NAC domain
PfamPF023651.5E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MAVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRSEAE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEVDRSG  180
YSPTPSRSTP DNMEPIEDGN TPLNRESPES ALHESPIDLP ALTEAQAAPI TRWLADRTDN  240
ATTNEVNISH MPHHGLDGGA KASPSAGAFP QLIGSQQNIH DNNELATVSA PMLPHEDFNN  300
FPLGAIGNFD GNMNPRDPVE EFLNQTIADP DEHSSTTSKA QYDSDTGIIP TEFENHGVMQ  360
GEFMDDLSGL ENLDFWPDDR NPQLSALYED TLLLHSTDQD VLSMDSGAES LQDLFNSMDD  420
SNARNNVWGN EPFLQGTGFP MSWPLQPNSA FPNQGTANKR LMLQLSESLS PDFDASMTRD  480
ECEDEEPGIV VTSKYVNEAP EESTAEKDMP SDGDDAEPTG ITILRRRHAP TASSFSDGDD  540
AESTGITILR QHQAPNASLL SDGDDAESTG ITILRRRQAP TASSASSFTQ QGAAVRRVRL  600
QSNLDAAPCS SVDGSSSCII NEGESERTME KPEIEENAGS TLAEGGTCHE DDQKEHDASA  660
ANAKSVLRLR KTAEGSDKEN KQEEEEGVLD SHVRAPGNKR GFPWYIIWLV LSVALVLLIS  720
LGIYGWDTLK ES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B1e-45916417166NAC domain-containing protein 19
4dul_A1e-45916417166NAC domain-containing protein 19
1ut7_B1e-45916417166NO APICAL MERISTEM PROTEIN
1ut7_A1e-45916417166NO APICAL MERISTEM PROTEIN
1ut4_B1e-45916417166NO APICAL MERISTEM PROTEIN
1ut4_A1e-45916417166NO APICAL MERISTEM PROTEIN
3swp_D1e-45916420169NAC domain-containing protein 19
3swp_C1e-45916420169NAC domain-containing protein 19
3swp_B1e-45916420169NAC domain-containing protein 19
3swp_A1e-45916420169NAC domain-containing protein 19
3swm_D1e-45916420169NAC domain-containing protein 19
3swm_C1e-45916420169NAC domain-containing protein 19
3swm_B1e-45916420169NAC domain-containing protein 19
3swm_A1e-45916420169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329680.0CT832968.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA203B11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015650289.10.0PREDICTED: NAC domain-containing protein 14 isoform X2
TrEMBLA0A0E0AR200.0A0A0E0AR20_9ORYZ; Uncharacterized protein
STRINGLOC_Os08g06140.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.14e-70NAC 014